Probiotics Quality Control

Count the Cells That Are Actually Alive

Plate counting tells you how many cells grow on agar. Flow cytometry tells you how many are viable in your product — in hours instead of days, with a fraction of the scatter. For starter cultures, food supplements and fermented products.

~2 h Instead of up to 72 h
96 Samples in < 30 min
±5 % System Accuracy
Complete Solution Provider
50 Years' Experience in Flow Cytometry
Specialized, Certified Reagents
The Measurement Problem

Your Plate Is Measuring Only a Part of the Story

The number of colony-forming units (CFU) reflects only a part of a microbial population — namely, those cells that can reproduce under the selected culture conditions and can form visible colonies. However, a microbial population comprises far more than just culturable cells — stressed, metabolically inactive, dying, and dead cells resulting from freeze-drying, tableting, or months of storage — complete the picture.

  • Up to three days of waiting. Bifidobacteria need 72 h of anaerobic incubation before a batch can be released.
  • Systematic underestimation. Viable-but-non-culturable cells are not counted correctly — so dose calculations are based on a number that is too pessimistic.
  • Wide scatter. Colony counting is manual and subjective. Published comparisons report roughly twice the relative standard deviation of a cytometric count.
  • No process feedback. By the time the plates have been analyzed, everything has long since been packed up. You're documenting the past rather than guiding the process.

Same product, two methods, 12 months of storage

Surviving cells of a multi-strain synbiotic after 12 months, measured in parallel

Plate count (CFU) Flow cytometry (AFU)
5 °Crefrigerated
76.9 %
86.3 %
25 °Croom temperature
61.5 %
93.8 %
30 °Caccelerated
below 10⁹
67.0 %

At 25 °C the plate count sees 61.5 % survivors — the cytometric count sees 93.8 %. The difference is not measurement error: those cells are alive, they simply no longer form colonies. At 30 °C the plate count drops below the 10⁹ threshold entirely, while two thirds of the cells are still viable. Anyone dosing overage against the CFU value is over-formulating an expensive raw material.
Source: 12-month shelf-life study on a multi-strain synbiotic, Frontiers in Microbiology 2022. — Placeholder: please confirm or replace with your own stability data.

The Method

One Measurement, Three Populations

Fluorescence staining separates each cell by membrane integrity. A green dye enters every cell; a red dye only enters cells whose membrane is compromised. Both signals are read at the same time — so you do not just get a number, you get the condition your culture is in.

AFU · active intermediate n-AFU · dead Green fluorescence — nucleic acid → Red fluorescence — membrane damage →
  • Active Intact membrane, green signal only. These are the cells that carry the effect of your product.
  • Intermediate — stressed, not dead Partially permeable membrane, green and red at once. This population is the early-warning signal: it grows before your total count drops, and it is exactly what a plate count cannot show you.
  • Dead Ruptured membrane, strong red signal. Active plus dead together give the total count, so every measurement also documents the ratio between them.

Schematic illustration of the population distribution, not measurement data. Placeholder — to be replaced with a real scattergram from your own samples.

The Workflow

From Sample to Report — Within One Day

No colony counting, no subjective reading, no three-day wait for the release decision.

01

Prepare the sample

Rehydrate powder, capsules or a fermenter sample, dilute and filter. CellTrics™ filters remove matrix particles that could disturb the measurement.

approx. 10 min
02

Stain

Dual staining with a green and a red fluorescent dye. Ready-to-use reagent kits with fixed protocols — ensure consistent results, while reducing hands-on time.

approx. 20 min
03

Measure

True volumetric absolute counting delivers cells per millilitre directly — without counting beads. With the autoloader a full 96-well plate runs unattended.

< 30 min / 96 samples
04

Evaluate & report

Predefined measurement scripts analyze the populations automatically and generate the report. Results can be transferred to your LIMS.

1 click
Highlights

What Changes in Day-to-Day Operation

Click a card to expand.

01

Release Decisions the Same Day

Hours instead of days

Where an incubation used to block the batch for up to three days, the result now arrives within a day. Storage empties faster, working capital is released earlier, and a deviation is noticed while the batch is still in the building.

~2 hTime-to-Result
Flow cytometer with autoloader and 96-well plate
02

Get the Complete Picture

Raw material cost

Flow cytometry not only characterizes population composition but also reveals the current health and status of individual cells. A count that identifies all cells — viable, stressed, dead — gives the complete picture of population health, enabling more accurate raw material calculations.

93.8 %vs. 61.5 % after 12 months
Filling line for capsules and vials
03

Reduced Variability

Precision

Counting thousands of cells individually instead of estimating colonies by eye reduces the method from the result. Published method comparisons report roughly half the relative standard deviation — which is what makes a specification limit defensible in the first place.

±5 %System Accuracy
Flow cytometer for production and industry
04

Detect Stress Before It Becomes Loss

Process control

Freeze-drying, tableting, heat, and other factors influence the health status of your population. Identify stress-related changes early and take action.

3Viability states resolved
Reagent kit with green and red staining vials
05

Operable Without a Cytometry Specialist

Routine lab

Predefined measurement scripts, guided QC routines and automatic reporting. Start-up takes under five minutes, and an adaptive cleaning option ensures the system remains clean and eliminates the risk of sample-to-sample carryover.

<0.1 %Carry-Over
CellTrics filters in a laboratory rack
06

Everything from One Source

Instrument · Reagents · Software · Support

Instrument, matched reagents, sample preparation, software and application support come from one manufacturer. When a result is questioned, you have one contact — not three suppliers pointing at each other.

1Point of contact
Sysmex Partec laboratory
The Setup

Instrument, Reagents, Sample Preparation

A configuration for microbiological viability counting in production and quality control. Which combination fits depends on your matrix and throughput — that is what the demo is for.

CyFlow RI-300 with AL-20 autoloader
Instrument

CyFlow™ RI-300 + CyFlow™ AL-20 Autoloader

The flow cytometer designed for microbiological quality control in industrial environments. As the only complete solution, it meets key requirements of standardization, traceability, automation, user-friendliness, accuracy, and sensitivity.

  • Blue laser 60 mW at 488 nm, 2 fluorescence channels plus forward and side scatter
  • True volumetric absolute counting — cells per millilitre without counting beads
  • AL-20 autoloader: one 96-well plate in under 30 minutes, barcode reader, priority sample slot
  • Start-up under 5 minutes · system accuracy ±5 % · carry-over below 0.1 %
CyStain BacCount Viable reagent kit
Reagents

CyStain™ BacCount Viable

Ready-to-use dual staining, green and red, for live/dead discrimination of bacteria. The kit is specified for industrial water; for probiotic matrices the protocol has to be adapted and validated — a point we would work through with you during application support.

  • Fixed protocol, no in-house mixing
  • 200 tests manual · 1,000 with autoloader
CellTrics filters
Sample preparation

CellTrics™ Filters

Powders, capsules and feed matrices carry particles that a cytometer will happily count as events. Disposable filters in eight mesh sizes remove them before the measurement.

  • 5 to 150 µm · single use · no cross-contamination
  • Free sample pack available
Who Works This Way

Wherever Live Cells Are the Product

The measurement problem is the same everywhere. What differs is the consequence.

Food supplements

Food Supplements

Capsules, sachets, powders and drops with a CFU claim on the label.

Microbiological culture

Starter Cultures

Frozen and freeze-dried cultures for the dairy and fermentation industry.

Fermented drinks

Dairies & Fermented Drinks

Yoghurt, kefir, fermented plant-based drinks with short shelf life.

Laboratory sample data

Contract Laboratories

Service labs running probiotic counts for many clients in parallel.

Pharmaceutical products

Pharma & Live Biotherapeutics

Live microbial products under GMP conditions.

Animal feed

Animal Feed

Probiotic feed additives and silage cultures for livestock.

Bring Us Your Hardest Sample

A freeze-dried multi-strain powder, a capsule at the end of its shelf life, a feed matrix. We will measure it with you — live on site or online — and show you what your plate count is not seeing.

Arrange a Demo
Get in Touch

Talk to Someone Who Knows Your Matrix

Tell us which strains you work with, which matrix they sit in and what your throughput looks like. Our application specialists will tell you honestly whether — and how — this method fits your process.

✓ Live or online ✓ Tailored to your samples ✓ No obligation

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